Untitled

Credits

• Analysis by Chrispin Chaguza
• Experiments by Anna York
• Sequencing by Jason Rosch and colleagues (St Jude’s)
• Interactive plots by Dan Weinberger
• Funding: Merck Investigator Studies Program

Summary

These plots represent pangenomes created based on the sequenced strains. The heatmaps indicate whether a particular strain has gained a gene (yellow) or lost a gene(dark blue) compared to the reference. The plots at the bottom show the genomic location of genes gained and lost, mapped to a TIGR4 reference

Presence absence for 15BC

plots$presence_15bc$p

Presence absence for 22F

plots$presence22f$p

## NULL

Map of presence absence for 15BC variants to TIGR4 genome

ggplotly(plots$map15bc)

Map of presence absence for 22F variants to TIGR4 genome

ggplotly(plots$map22f)