These plots represent pangenomes created based on the sequenced strains. The heatmaps indicate whether a particular strain has gained a gene (yellow) or lost a gene(dark blue) compared to the reference. The plots at the bottom show the genomic location of genes gained and lost, mapped to a TIGR4 reference
plots$presence_15bc$p
plots$presence22f$p
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ggplotly(plots$map15bc)
ggplotly(plots$map22f)