Credits

Summary

These plots represent pangenomes created based on the sequenced strains. The heatmaps indicate whether a particular strain has gained a gene (yellow) or lost a gene(dark blue) compared to the reference. The plots at the bottom show the genomic location of genes gained and lost, mapped to a TIGR4 reference

Presence absence for 15BC

plots$presence_15bc$p

Presence absence for 22F

plots$presence22f$p
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Map of presence absence for 15BC variants to TIGR4 genome

ggplotly(plots$map15bc)

Map of presence absence for 22F variants to TIGR4 genome

ggplotly(plots$map22f)